Build fails at 80%
Created by: HenriqueCSJ
Here is the output:
[ 66%] Linking CXX static library librealtime.a
[ 66%] Built target realtime
Scanning dependencies of target linkexe
[ 66%] Built target linkexe
Scanning dependencies of target cxxcq
[ 67%] Building CXX object src/cxxapi/CMakeFiles/cxxcq.dir/input/parse.cxx.o
[ 68%] Building CXX object src/cxxapi/CMakeFiles/cxxcq.dir/input/molopts.cxx.o
[ 70%] Building CXX object src/cxxapi/CMakeFiles/cxxcq.dir/input/basisopts.cxx.o
[ 71%] Building CXX object src/cxxapi/CMakeFiles/cxxcq.dir/input/singleslateropts.cxx.o
[ 72%] Building CXX object src/cxxapi/CMakeFiles/cxxcq.dir/input/scfopts.cxx.o
[ 73%] Building CXX object src/cxxapi/CMakeFiles/cxxcq.dir/input/rtopts.cxx.o
[ 74%] Building CXX object src/cxxapi/CMakeFiles/cxxcq.dir/input/intsopts.cxx.o
[ 75%] Building CXX object src/cxxapi/CMakeFiles/cxxcq.dir/input/miscopts.cxx.o
[ 76%] Building CXX object src/cxxapi/CMakeFiles/cxxcq.dir/procedural.cxx.o
[ 77%] Linking CXX static library libcxxcq.a
[ 77%] Built target cxxcq
Scanning dependencies of target chronusq
[ 78%] Building CXX object src/cxxapi/CMakeFiles/chronusq.dir/chronusq.cxx.o
[ 80%] Linking CXX executable chronusq
libcxxcq.a(procedural.cxx.o): In function `ChronusQ::SafeFile::createFile()':
procedural.cxx:(.text._ZN8ChronusQ8SafeFile10createFileEv[_ZN8ChronusQ8SafeFile10createFileEv]+0x74): undefined reference to `H5::H5File::H5File(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, H5::FileCreatPropList const&, H5::FileAccPropList const&)'
../realtime/librealtime.a(impl.cxx.o): In function `ChronusQ::SafeFile::createGroup(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
impl.cxx:(.text._ZN8ChronusQ8SafeFile11createGroupERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE[_ZN8ChronusQ8SafeFile11createGroupERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE]+0x8c): undefined reference to `H5::H5File::H5File(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, H5::FileCreatPropList const&, H5::FileAccPropList const&)'
impl.cxx:(.text._ZN8ChronusQ8SafeFile11createGroupERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE[_ZN8ChronusQ8SafeFile11createGroupERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE]+0x23e): undefined reference to `H5::CommonFG::openGroup(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
impl.cxx:(.text._ZN8ChronusQ8SafeFile11createGroupERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE[_ZN8ChronusQ8SafeFile11createGroupERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE]+0x2be): undefined reference to `H5::CommonFG::openGroup(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
impl.cxx:(.text._ZN8ChronusQ8SafeFile11createGroupERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE[_ZN8ChronusQ8SafeFile11createGroupERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE]+0x3b5): undefined reference to `H5::CommonFG::createGroup(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long) const'
../realtime/librealtime.a(impl.cxx.o): In function `void ChronusQ::SafeFile::writeData<double>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, double*)':
impl.cxx:(.text._ZN8ChronusQ8SafeFile9writeDataIdEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_[_ZN8ChronusQ8SafeFile9writeDataIdEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_]+0x81): undefined reference to `H5::H5File::H5File(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, H5::FileCreatPropList const&, H5::FileAccPropList const&)'
impl.cxx:(.text._ZN8ChronusQ8SafeFile9writeDataIdEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_[_ZN8ChronusQ8SafeFile9writeDataIdEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_]+0xa4): undefined reference to `H5::CommonFG::openDataSet(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
../realtime/librealtime.a(impl.cxx.o): In function `void ChronusQ::SafeFile::createDataSet<double>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::vector<unsigned long long, std::allocator<unsigned long long> > const&)':
impl.cxx:(.text._ZN8ChronusQ8SafeFile13createDataSetIdEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt6vectorIySaIyEE[_ZN8ChronusQ8SafeFile13createDataSetIdEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt6vectorIySaIyEE]+0x7f): undefined reference to `H5::H5File::H5File(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, H5::FileCreatPropList const&, H5::FileAccPropList const&)'
impl.cxx:(.text._ZN8ChronusQ8SafeFile13createDataSetIdEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt6vectorIySaIyEE[_ZN8ChronusQ8SafeFile13createDataSetIdEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt6vectorIySaIyEE]+0xfc): undefined reference to `H5::CommonFG::createDataSet(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, H5::DataType const&, H5::DataSpace const&, H5::DSetCreatPropList const&) const'
../singleslater/libsingleslater.a(impl.cxx.o): In function `void ChronusQ::SafeFile::readData<double>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, double*)':
impl.cxx:(.text._ZN8ChronusQ8SafeFile8readDataIdEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_[_ZN8ChronusQ8SafeFile8readDataIdEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_]+0x81): undefined reference to `H5::H5File::H5File(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, H5::FileCreatPropList const&, H5::FileAccPropList const&)'
impl.cxx:(.text._ZN8ChronusQ8SafeFile8readDataIdEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_[_ZN8ChronusQ8SafeFile8readDataIdEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_]+0xa4): undefined reference to `H5::CommonFG::openDataSet(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
../singleslater/libsingleslater.a(impl.cxx.o): In function `void ChronusQ::SafeFile::readData<std::complex<double> >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::complex<double>*)':
impl.cxx:(.text._ZN8ChronusQ8SafeFile8readDataISt7complexIdEEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_[_ZN8ChronusQ8SafeFile8readDataISt7complexIdEEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_]+0x81): undefined reference to `H5::H5File::H5File(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, H5::FileCreatPropList const&, H5::FileAccPropList const&)'
impl.cxx:(.text._ZN8ChronusQ8SafeFile8readDataISt7complexIdEEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_[_ZN8ChronusQ8SafeFile8readDataISt7complexIdEEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_]+0xa4): undefined reference to `H5::CommonFG::openDataSet(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
../singleslater/libsingleslater.a(impl.cxx.o): In function `void ChronusQ::SafeFile::writeData<std::complex<double> >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::complex<double>*)':
impl.cxx:(.text._ZN8ChronusQ8SafeFile9writeDataISt7complexIdEEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_[_ZN8ChronusQ8SafeFile9writeDataISt7complexIdEEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_]+0x81): undefined reference to `H5::H5File::H5File(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, H5::FileCreatPropList const&, H5::FileAccPropList const&)'
impl.cxx:(.text._ZN8ChronusQ8SafeFile9writeDataISt7complexIdEEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_[_ZN8ChronusQ8SafeFile9writeDataISt7complexIdEEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPT_]+0xa4): undefined reference to `H5::CommonFG::openDataSet(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
../singleslater/libsingleslater.a(impl.cxx.o): In function `void ChronusQ::SafeFile::createDataSet<std::complex<double> >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::vector<unsigned long long, std::allocator<unsigned long long> > const&)':
impl.cxx:(.text._ZN8ChronusQ8SafeFile13createDataSetISt7complexIdEEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt6vectorIySaIyEE[_ZN8ChronusQ8SafeFile13createDataSetISt7complexIdEEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt6vectorIySaIyEE]+0x7f): undefined reference to `H5::H5File::H5File(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, H5::FileCreatPropList const&, H5::FileAccPropList const&)'
impl.cxx:(.text._ZN8ChronusQ8SafeFile13createDataSetISt7complexIdEEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt6vectorIySaIyEE[_ZN8ChronusQ8SafeFile13createDataSetISt7complexIdEEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt6vectorIySaIyEE]+0xfc): undefined reference to `H5::CommonFG::createDataSet(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, H5::DataType const&, H5::DataSpace const&, H5::DSetCreatPropList const&) const'
../singleslater/libsingleslater.a(impl.cxx.o): In function `H5::CompType H5PredType<std::complex<double> >()':
impl.cxx:(.text._Z10H5PredTypeISt7complexIdEEN2H58CompTypeEv[_Z10H5PredTypeISt7complexIdEEN2H58CompTypeEv]+0x69): undefined reference to `H5::CompType::insertMember(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, H5::DataType const&) const'
impl.cxx:(.text._Z10H5PredTypeISt7complexIdEEN2H58CompTypeEv[_Z10H5PredTypeISt7complexIdEEN2H58CompTypeEv]+0xc7): undefined reference to `H5::CompType::insertMember(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, H5::DataType const&) const'
collect2: error: ld returned 1 exit status
make[2]: *** [src/cxxapi/CMakeFiles/chronusq.dir/build.make:116: src/cxxapi/chronusq] Error 1
make[1]: *** [CMakeFiles/Makefile2:837: src/cxxapi/CMakeFiles/chronusq.dir/all] Error 2
make: *** [Makefile:95: all] Error 2